| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 496,653:1 | +AG | 100% | coding (832/1047 nt) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 496,653 | 1 | . | A | 100.0% | 39.5 / NA | 13 | M278L (ATG→TTG) | galT | galactose‑1‑phosphate uridylyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (0/13); total (0/13) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | minE | 496,653 | 2 | . | G | 100.0% | 45.3 / NA | 13 | M278L (ATG→CTG) | galT | galactose‑1‑phosphate uridylyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (0/13); total (0/13) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGCCATTAAATGGCGCGCCGTGCCAGCCCAT‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAACGCCAGCGC > minE/496623‑496719 || cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:2552380/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:1744265/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:393950/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:1604308/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:1492901/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:674146/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:2782841/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:836937/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:122618/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:869859/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:1117009/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:911272/68‑1 (MQ=255)cGCCATTAAATGGCGCGCCGTGCCAGCCCATAGAGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCAt < 1:2476244/68‑1 (MQ=255) t‑‑AGAGTAGGGGAAGTAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:417290/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:280053/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2811886/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2751207/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2815249/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2728343/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:559814/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:300358/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:35164/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2468118/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:705289/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:763076/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:771570/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:892161/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:915263/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:930550/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:953424/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1015333/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1019158/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1079343/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:10947/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1160164/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1232902/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1327609/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1353040/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:148294/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1492956/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1511008/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1737494/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1924926/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1940233/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1962589/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2117778/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2159935/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2231065/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2464800/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:2608399/1‑67 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagc > 1:145054/1‑65 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgcc > 1:1087579/1‑62 (MQ=255) t‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAccccag > 1:646449/1‑64 (MQ=255) t‑‑AGAGTAGCGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAAcgccagcgc > 1:1050659/1‑67 (MQ=255) || CGCCATTAAATGGCGCGCCGTGCCAGCCCAT‑‑AGAGTAGGGGAAGGAGCACTGGAAGAGGTTGTCATAACGACTGGTCAGCTTTTTCAACGCCAGCGC > minE/496623‑496719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |