| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,276,861:1 | +TC | 100% | noncoding (8/90 nt) | serU ← | tRNA‑Ser |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,276,861 | 1 | . | T | 100.0% | 157.6 / NA | 47 | noncoding (8/90 nt) | serU | tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (0/47); total (0/47) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | minE | 1,276,861 | 2 | . | C | 100.0% | 176.8 / NA | 47 | noncoding (8/90 nt) | serU | tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (0/47); total (0/47) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGTTCAGCCGCTCCGGCA‑‑TCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAC > minE/1276844‑1276911 || cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAATTTTGGCATTTTAAc < 1:2302249/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGGATTTTAAc < 1:845296/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTTAc < 1:167454/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:41554/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2411249/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2539847/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2577027/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2817274/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2820115/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:285022/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:306244/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:36805/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:394475/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2114109/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:421469/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:56271/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:638831/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:640189/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:685737/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:69905/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:71559/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:72225/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:85810/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:864311/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1484048/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1124224/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:113382/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1169186/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:122977/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1237521/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:130633/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1320882/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1322412/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1339906/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1395840/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1437399/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2207552/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1579611/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1579688/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1802284/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1823404/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1858089/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1966225/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2059745/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:2094029/70‑1 (MQ=255)cGTTCAGCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1095708/70‑1 (MQ=255) gCCGCTCCGGCATCTCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAc < 1:1983548/64‑1 (MQ=255) || CGTTCAGCCGCTCCGGCA‑‑TCTCTCCGTTCAGATGGTTGCCATGATGCCAGGAAATTTGGCATTTTAAC > minE/1276844‑1276911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |