Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,620,867:1 +A 100% coding (405/702 nt) eutQ ← conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,620,8671.A82.1% 104.5 / 21.0 39coding (405/702 nt)eutQconserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (7/0);  new base A (0/32);  total (7/32)
Fisher's exact test for biased strand distribution p-value = 6.50e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

TCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCACCGATTTGAAGC  >  minE/1620836‑1620937
                                |                                                                      
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:514753/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:368497/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:313362/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:263735/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:25572/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:410979/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2543949/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2531621/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2497528/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:419844/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:482003/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2302030/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1047637/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2182244/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2072396/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:206432/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1904355/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1816445/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1811769/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:585932/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1724784/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:170338/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1699704/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1616930/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1535059/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1499691/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1485021/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:640581/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1181742/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:1109129/71‑1 (MQ=255)
tCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:867937/71‑1 (MQ=255)
 cAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAAACGACCAAACTTGACGCTACTGCCATCAATCACttt                                  <  1:2189017/70‑1 (MQ=255)
                cGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCgg                 >  1:2475677/1‑71 (MQ=255)
                cGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCgg                 >  1:1278827/1‑71 (MQ=255)
                cGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCgg                 >  1:1077688/1‑71 (MQ=255)
                cGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCg                  >  1:82854/1‑70 (MQ=255)
                      tGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCAcc            >  1:2453209/1‑70 (MQ=255)
                      tGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCAcc            >  1:1754692/1‑70 (MQ=255)
                      tGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCAc             >  1:2043608/1‑69 (MQ=255)
                               gAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCACCGATTTGAAGc  <  1:2553203/71‑1 (MQ=255)
                                |                                                                      
TCAAGCCCACGCAATGCGGCTCTGCGCCGTCGAAACGACCAAACTTGACGCTACTGCCATCAATCACTTTGATGCCGCCTTTGCCGGTCACCGATTTGAAGC  >  minE/1620836‑1620937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: