Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 656,044 | T→C | 100% | F44L (TTC→CTC) | ycbS → | predicted outer membrane usher protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 656,044 | 0 | T | C | 79.0% | 34.5 / 6.1 | 19 | F44L (TTC→CTC) | ycbS | predicted outer membrane usher protein |
Reads supporting (aligned to +/- strand): ref base T (4/0); new base C (0/15); total (4/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.58e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACA > minE/655990‑656096 | tttGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAga > 1:183472/1‑62 (MQ=255) tttGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATACCt > 1:2252913/1‑70 (MQ=255) tgtgTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCaa > 1:1453427/1‑71 (MQ=255) tgtgTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCaa > 1:2180887/1‑71 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2145208/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:494339/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:381850/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2405010/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2382286/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2379433/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2276746/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:2227129/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:102089/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1937403/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1790798/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1629366/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1605367/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1238338/69‑1 (MQ=255) gTTCGATCCTGCTTTTCTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACa < 1:1155392/69‑1 (MQ=255) | TTTGTGTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATTTGTCTCGTTTCGAAAAAGGACA > minE/655990‑656096 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |