| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 899,197 | C→T | 100% | P78L (CCT→CTT) | pspC → | transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 899,197 | 0 | C | T | 100.0% | 45.5 / NA | 15 | P78L (CCT→CTT) | pspC | transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/15); total (0/15) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AATGCCGGACAACATGGCCTTTGGTGAGCAGCTACCTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTG > minE/899162‑899232 | aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:1075376/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:1178555/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:1667463/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:2345350/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:252460/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:2583145/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:2751231/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:2754976/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:286591/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:303431/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:423128/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:881002/71‑1 (MQ=255)aaTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:95486/71‑1 (MQ=255) aTGCCGGACAACATGGCCTTTGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:545310/70‑1 (MQ=255) tttGGTGAGCAGCTACTTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTg < 1:1062299/52‑1 (MQ=255) | AATGCCGGACAACATGGCCTTTGGTGAGCAGCTACCTTCCAGCAGCGAATTGCTGGATGAAGTCGACCGTG > minE/899162‑899232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |