Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,722,197 A→T 100% intergenic (‑5/+160) yfhG ← / ← yfhK conserved hypothetical protein/predicted sensory kinase in two‑component system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,722,1970AT86.0% 136.5 / 14.0 50intergenic (‑5/+160)yfhG/yfhKconserved hypothetical protein/predicted sensory kinase in two‑component system
Reads supporting (aligned to +/- strand):  ref base A (0/7);  new base T (0/43);  total (0/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATG  >  minE/1722174‑1722251
                       |                                                      
gTTGAAAAATGTGTCGCATATTTTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1146806/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2894176/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1967482/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1975145/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2221145/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:496277/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:337900/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2313262/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2902997/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2478762/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1910977/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2556457/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2888480/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2606713/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2626563/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2759478/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2807884/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2860359/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1635788/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1132447/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:992276/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1290422/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:956897/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1445221/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:899724/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1514284/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:850025/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:503450/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1656834/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:761952/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:74747/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:181892/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1827799/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:722048/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGAGCGTAAt                        <  1:1142818/56‑1 (MQ=255)
gTTGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCACAGTGGGCGTAAt                        <  1:1774783/56‑1 (MQ=255)
 ttGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGTGCGTAAt                        <  1:1443404/55‑1 (MQ=255)
 ttGAAAAATGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:1506477/55‑1 (MQ=255)
  tGAAAAATGTGTCGCATATTCTCCAGACATAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2919543/54‑1 (MQ=255)
       aaTGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:2411299/49‑1 (MQ=255)
       aaTGTGTCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:455109/49‑1 (MQ=255)
       aaTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:2515334/71‑1 (MQ=255)
       aaTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:2264815/71‑1 (MQ=255)
       aaTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:2263511/71‑1 (MQ=255)
       aaTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:1550200/71‑1 (MQ=255)
       aaTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:1152111/71‑1 (MQ=255)
       aaTGTGGCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:2603963/71‑1 (MQ=255)
        aTGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtggacatg  <  1:1870436/70‑1 (MQ=255)
          gtgtCGCATATTCTCCAGACTTAAAGCCTATCCCAGTGGGCGTAAt                        <  1:167737/46‑1 (MQ=255)
                   atTCTCCAGACTTAAAGCCTAACCCAGTGGGCGTAAt                        <  1:1948880/37‑1 (MQ=38)
                       |                                                      
GTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATG  >  minE/1722174‑1722251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: