Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,892,019:1 +GC 100% intergenic (‑437/+54) gudP ← / ← ygdL predicted D‑glucarate transporter/conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,892,0191.G100.0% 56.8 / NA 19intergenic (‑437/+54)gudP/ygdLpredicted D‑glucarate transporter/conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (14/5);  total (14/5)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*minE1,892,0192.C100.0% 57.0 / NA 19intergenic (‑437/+54)gudP/ygdLpredicted D‑glucarate transporter/conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (14/5);  total (14/5)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AAAGATTCGATTCAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCA‑‑TAAGCACAGAACCGGGTCGGATAAGACGTTCGCGTCTCATCCGACCT  >  minE/1891966‑1892066
                                                      ||                                               
aaaGATTCGATTCAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCgg                                  >  1:2076979/1‑71 (MQ=255)
 aaGATTCGATTCAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCgg                                  >  1:376655/1‑70 (MQ=255)
        gattcAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGAt                           <  1:833369/70‑1 (MQ=255)
            cAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGAACAGAACCGGGTCGGATAAGAc                      >  1:1894143/1‑71 (MQ=255)
             aGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGAc                      <  1:482065/70‑1 (MQ=255)
                   gCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCgg                                  >  1:775619/1‑52 (MQ=255)
                   gCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTcgcg               >  1:801836/1‑71 (MQ=255)
                   gCTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTcgcg               >  1:506115/1‑71 (MQ=255)
                    cTAAAACGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTcgcg               >  1:1659987/1‑70 (MQ=255)
                      taaaCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGAc                      >  1:675321/2‑61 (MQ=255)
                      aaaaCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGAc                      >  1:256384/1‑61 (MQ=255)
                      aaaaCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTCGCGtct            >  1:1489087/1‑71 (MQ=255)
                       aaaCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTCGCGtctc           <  1:916025/71‑1 (MQ=255)
                        aaCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATaa                         <  1:316911/56‑1 (MQ=255)
                         aCGACATTTACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGa                       >  1:1104364/1‑57 (MQ=255)
                                ttACCGCTCGCTGAACATATCAGCTAAGCACAGAAc                                     <  1:490469/36‑1 (MQ=25)
                                 tACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGTGTCGGATAAGACGTTCGCGTCTCATCCGAc    >  1:1399624/1‑68 (MQ=255)
                                 tACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTCGCGTCTCATCCGACCt  >  1:1893349/1‑70 (MQ=255)
                                 tACCGCTCGCTGAACATATCAGCTAAGCACAGAACCGGGTCGGATAAGACGTTCGCGTCTCATCCGACCt  >  1:958/1‑70 (MQ=255)
                                                      ||                                               
AAAGATTCGATTCAGCACCGCTAAAACGACATTTACCGCTCGCTGAACATATCA‑‑TAAGCACAGAACCGGGTCGGATAAGACGTTCGCGTCTCATCCGACCT  >  minE/1891966‑1892066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: