Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 298,537 C→T 27.9% L400L (CTG→TTG)  mdlA → fused predicted multidrug transporter subunits and ATP‑binding components of ABC superfamily

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE298,5370CT27.9% 57.8 / 23.4 37L400L (CTG→TTG) mdlAfused predicted multidrug transporter subunits and ATP‑binding components of ABC superfamily
Reads supporting (aligned to +/- strand):  ref base C (12/14);  new base T (6/4);  total (19/18)
Fisher's exact test for biased strand distribution p-value = 7.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01

TTGTCGCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCATTCCTTTT  >  minE/298474‑298604
                                                               |                                                                   
ttgtCGCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGa                                                               <  1:159724/70‑1 (MQ=255)
  gtCGCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGt                                                            >  1:764720/1‑71 (MQ=255)
  gtCGCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGt                                                            >  1:743583/1‑71 (MQ=255)
     gCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTAc                                                         <  1:865796/71‑1 (MQ=255)
       tCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACaa                                                       >  1:975208/1‑71 (MQ=255)
          ttCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTAc                                                         <  1:1272856/66‑1 (MQ=255)
            cAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGa                                                  >  1:1598020/1‑71 (MQ=255)
                 tCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCg                                                   <  1:1439834/65‑1 (MQ=255)
                   aTTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTTTGACGAAGTTACa                                                        >  1:472783/1‑58 (MQ=255)
                   aTTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGtt                                                           <  1:183177/55‑1 (MQ=255)
                   aTTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGtt                                                           <  1:2214117/55‑1 (MQ=255)
                   aTTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTgg                                           >  1:2014656/1‑71 (MQ=255)
                     ttCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCg                                         >  1:615635/1‑71 (MQ=255)
                       cGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGt                                        <  1:1153906/70‑1 (MQ=255)
                            tCAGCGAGGGGGATATTCGCTTTCATGATATTCCTTTGACGAAGTTACAACTc                                                    <  1:1255983/53‑1 (MQ=255)
                               gCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAgc                                     >  1:2091663/1‑65 (MQ=255)
                                  aGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCg                            >  1:382521/1‑71 (MQ=255)
                                   gggggATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCgg                           <  1:936595/71‑1 (MQ=255)
                                    ggggATATTCGCTTTCATGATATTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGt                          <  1:1682024/71‑1 (MQ=255)
                                    ggggATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCgg                           <  1:1118913/70‑1 (MQ=255)
                                      ggATATTCGCTTTCATGATATTCCTCTGACGAAGTTAc                                                         <  1:352223/38‑1 (MQ=255)
                                      ggATATTCGCTTTCATGATATTCCTCTGACGAAGTTAc                                                         <  1:806463/38‑1 (MQ=255)
                                        atatTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTAGATAGCTGGCGTAGCCGCCTGGCGGTAGtt                      <  1:545395/71‑1 (MQ=255)
                                         tatTCGCTTTCATGATATTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTa                     <  1:1070032/71‑1 (MQ=255)
                                          atTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAg                    >  1:539779/1‑71 (MQ=255)
                                           ttCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGa                                                  <  1:1425895/40‑1 (MQ=255)
                                             cGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAg                        >  1:321494/1‑64 (MQ=255)
                                             cGCTTTCATGATATTCCTATGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTa                         >  1:381793/1‑63 (MQ=255)
                                              gCTTTCATGATATTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTgg                              >  1:125594/1‑57 (MQ=255)
                                              gCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCa                 <  1:944080/70‑1 (MQ=255)
                                                    aTGATATTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGa               >  1:1177176/1‑66 (MQ=255)
                                                      gATATTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCAtt        >  1:2154150/1‑71 (MQ=255)
                                                       atatTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCATTc       >  1:1189493/1‑71 (MQ=255)
                                                        tatTCCTTTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCa          <  1:655250/67‑1 (MQ=255)
                                                           tCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCATTCCttt   >  1:194211/1‑71 (MQ=255)
                                                            ccTTTGACGAAGTTACAACTCGATAGCTGGCGTAgccgc                                  >  1:1261620/1‑39 (MQ=255)
                                                            ccTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCATTCCtttt  >  1:527409/1‑71 (MQ=255)
                                                               |                                                                   
TTGTCGCTCATTCAGCGTCATTTCGACGTCAGCGAGGGGGATATTCGCTTTCATGATATTCCTCTGACGAAGTTACAACTCGATAGCTGGCGTAGCCGCCTGGCGGTAGTTAGCCAGACGCCATTCCTTTT  >  minE/298474‑298604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: