| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,597,495 | A→G | 6.0% | intergenic (‑491/+386) | arsR ← / ← gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,597,495 | 0 | A | G | 6.0% | 260.6 / 8.5 | 100 | intergenic (‑491/+386) | arsR/gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (51/43); new base G (4/2); total (55/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CTGAGTTGGTGGCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGC > minE/2597427‑2597563 | cTGAGTTGGTGGCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAAc > 1:1108710/1‑71 (MQ=255) tggCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAg < 1:1028248/71‑1 (MQ=255) tggCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAg < 1:561640/71‑1 (MQ=255) gCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAgg < 1:2059010/70‑1 (MQ=255) gCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGa > 1:696754/1‑71 (MQ=255) ctGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGt > 1:708255/1‑71 (MQ=255) gACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTa > 1:7013/1‑57 (MQ=255) gACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTa > 1:825265/1‑57 (MQ=255) gACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTa > 1:406956/1‑57 (MQ=255) aCTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCt > 1:1160115/1‑71 (MQ=255) cTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAg < 1:296409/62‑1 (MQ=255) cTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTg > 1:1372769/1‑71 (MQ=255) tGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTg < 1:63923/57‑1 (MQ=255) tGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTgg > 1:833474/1‑71 (MQ=255) ggAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGa > 1:247805/1‑62 (MQ=255) gAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTgg < 1:2067057/69‑1 (MQ=255) gAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGtt > 1:1104741/1‑71 (MQ=255) gTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGttt > 1:512402/1‑70 (MQ=255) agaTAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtat > 1:2140874/1‑70 (MQ=255) tAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACt < 1:991630/43‑1 (MQ=255) tAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACt < 1:604281/43‑1 (MQ=255) tAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACt < 1:896660/43‑1 (MQ=255) tAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTAt < 1:1859607/45‑1 (MQ=255) tAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTAt < 1:2024994/45‑1 (MQ=255) aGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt > 1:673279/1‑71 (MQ=255) aGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt > 1:803698/1‑71 (MQ=255) ccATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGc < 1:534657/71‑1 (MQ=255) tcatcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATg < 1:299269/71‑1 (MQ=255) catcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATg > 1:1412822/1‑70 (MQ=255) atcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGt < 1:1202583/70‑1 (MQ=255) atcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGt < 1:876382/70‑1 (MQ=255) atcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTa > 1:1339338/1‑71 (MQ=255) atcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTa > 1:1806567/1‑71 (MQ=255) tcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtata < 1:417070/59‑1 (MQ=255) tcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGt < 1:421459/69‑1 (MQ=255) cTAACGCATCAATGCTAATACCATACTGAGACTATTGCAAg < 1:1672452/41‑1 (MQ=255) cTAACGCATCAATGCTAATACCATACTGAGACTATTGCAAg < 1:893598/41‑1 (MQ=255) tAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTg > 1:968845/1‑71 (MQ=255) aaCGCATCAATGCTAATACCATACTGAGACTATTGCAAGGa > 1:1074150/1‑41 (MQ=255) aaCGCATCAATGCTAATACCATACTGAGACTATTGCAAGGa > 1:45429/1‑41 (MQ=255) aaCGCATCAATGCTAATACCATACTGAGACTATTGCAAGGa > 1:1772198/1‑41 (MQ=255) aaCGCATCAATGCTAATACCATACTGAGACTATTGCAAGGa > 1:1753310/1‑41 (MQ=255) aaCGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTg > 1:598766/1‑70 (MQ=255) aCGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTg < 1:608465/69‑1 (MQ=255) aCGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTa > 1:3477/1‑71 (MQ=255) aCGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTa > 1:1010323/1‑71 (MQ=255) gCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACt < 1:357404/66‑1 (MQ=255) cATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACt < 1:354906/65‑1 (MQ=255) aTCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGAt < 1:50407/71‑1 (MQ=255) tCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa < 1:1219040/57‑1 (MQ=255) tCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa < 1:2205995/57‑1 (MQ=255) tCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa < 1:278673/57‑1 (MQ=255) cAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTTGTTTTATAACCTGCATGTACTGTATGa > 1:1089035/1‑68 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtata < 1:244551/48‑1 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtat > 1:1884696/1‑47 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTa > 1:901332/1‑59 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTa < 1:276187/70‑1 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1174609/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1559315/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1882129/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1882055/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1604978/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:1608226/1‑71 (MQ=255) tGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATcc < 1:829093/71‑1 (MQ=255) gCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAAc > 1:1963032/1‑47 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCAt > 1:333642/1‑52 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCAt > 1:123172/1‑52 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa > 1:702413/1‑63 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa > 1:1996131/1‑63 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCa < 1:966734/70‑1 (MQ=255) cTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCa < 1:505979/70‑1 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGtt < 1:1548943/70‑1 (MQ=255) aTACCATAATGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:1483525/1‑69 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtata < 1:984445/40‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTtata < 1:895864/40‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa < 1:398481/59‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa < 1:1906147/59‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAg < 1:1239639/71‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAg < 1:1036552/71‑1 (MQ=255) aCCATACTGAAACTATTGCAAGGACGTGCTGGTTTtat > 1:2133174/1‑38 (MQ=255) aCCATACTGAAACTATTGCAAGGACGTGCTGGTTTtat > 1:801128/1‑38 (MQ=255) ccATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa > 1:1478220/1‑45 (MQ=255) ccATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa > 1:2134654/1‑45 (MQ=255) ccATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa > 1:1069358/1‑45 (MQ=255) ccATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGct > 1:1010090/1‑71 (MQ=255) ccATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGc > 1:1446685/1‑70 (MQ=255) cATACTGAAACTATTGCAAGGACGTGCTGGTTTtat < 1:852125/36‑1 (MQ=255) cATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAAGCTGCATGTACTGTATGATTATCCAGTTAGctc < 1:1992790/71‑1 (MQ=255) aTACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct < 1:818153/71‑1 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTtata < 1:995812/35‑1 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTg < 1:882326/40‑1 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:1744321/71‑1 (MQ=255) aCTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:1977133/1‑69 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAg > 1:2097157/1‑60 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAg > 1:1834753/1‑60 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAg > 1:2062508/1‑60 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTa > 1:408165/1‑63 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAg > 1:144497/1‑71 (MQ=255) gAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAgg > 1:1595394/1‑70 (MQ=255) aaaCTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGc < 1:1122642/70‑1 (MQ=255) | CTGAGTTGGTGGCTCTGACTGGAGTGAGATAGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGC > minE/2597427‑2597563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |