Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,094,567 T→C 29.2% I604V (ATT→GTT)  ydiJ ← predicted FAD‑linked oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,094,5670TC29.2% 30.1 / 16.2 24I604V (ATT→GTT) ydiJpredicted FAD‑linked oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (9/8);  new base C (4/3);  total (13/11)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01

CAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAGTTGAAGCATAAACCG  >  minE/1094498‑1094634
                                                                     |                                                                   
cAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATc                                                                    >  1:1133974/1‑71 (MQ=255)
cAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATc                                                                    >  1:462944/1‑71 (MQ=255)
        cgATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTg                                                            <  1:929772/71‑1 (MQ=255)
         gATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTgg                                                           <  1:1483033/71‑1 (MQ=255)
         gATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTgg                                                           <  1:293045/71‑1 (MQ=255)
             cGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAACCCGGTTCTGGGTg                                                        <  1:625535/70‑1 (MQ=255)
                   caaACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCa                                                 >  1:1475719/1‑71 (MQ=255)
                      tcGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTg                                                        <  1:1498574/60‑1 (MQ=255)
                                 cACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATc                                   >  1:682833/1‑71 (MQ=255)
                                 cACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATc                                   >  1:1140323/1‑71 (MQ=255)
                                      aCCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGAc                               >  1:2058383/1‑70 (MQ=255)
                                        cAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTAc                            <  1:1294303/71‑1 (MQ=255)
                                         aGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATc                                               <  1:451907/51‑1 (MQ=255)
                                          gCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACg                           <  1:645599/70‑1 (MQ=255)
                                          gCGTTGCGCGCCCTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACgg                          >  1:1775746/1‑71 (MQ=255)
                                          gCGTTGCGCGCCCTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACgg                          >  1:1778249/1‑71 (MQ=255)
                                               gcgcgcCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCAt                      >  1:2164411/1‑70 (MQ=255)
                                                 gcgcCCTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCaa                   <  1:585193/71‑1 (MQ=255)
                                                  cgcCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCaa                   <  1:1071617/70‑1 (MQ=255)
                                                      cTTTCGGTGAATGAACCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAGTTg              <  1:364101/71‑1 (MQ=255)
                                                         tCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGCCGGACACATCGGACTACGGGCATCAAAGTTGAAg           >  1:804656/1‑71 (MQ=255)
                                                         tCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAg                 >  1:2064512/1‑65 (MQ=255)
                                                         tCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAGTTGAAg           >  1:1766051/1‑71 (MQ=255)
                                                         tCGGTGAATGAATCCGGATCTGGGTGATCTTCATCg                                              >  1:519268/1‑36 (MQ=255)
                                                                 tgaatCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGAc                               >  1:439743/1‑43 (MQ=255)
                                                                  gaatCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAGTTGAAGCATAAACCg  >  1:1943800/1‑71 (MQ=255)
                                                                     |                                                                   
CAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATCAAAGTTGAAGCATAAACCG  >  minE/1094498‑1094634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: