| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,151,211 | A→G | 22.2% | V2V (GTA→GTG) | ydjQ → | endonuclease of nucleotide excision repair |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,151,211 | 0 | A | G | 22.2% | 68.0 / 18.0 | 36 | V2V (GTA→GTG) | ydjQ | endonuclease of nucleotide excision repair |
| Reads supporting (aligned to +/- strand): ref base A (19/9); new base G (5/3); total (24/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.65e-01 | |||||||||||
TCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTTAC > minE/1151146‑1151278 | tctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCACTCGGAGTCAACAGTGGTACGGCg > 1:188421/1‑71 (MQ=255) ttttttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGtt > 1:1819401/1‑71 (MQ=255) ttttttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGtt > 1:1507678/1‑71 (MQ=255) gCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTcc > 1:947152/1‑71 (MQ=255) cccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGttt < 1:1273222/58‑1 (MQ=255) ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGc < 1:1601948/71‑1 (MQ=255) gCCTGTTACACTGGATATATAACCAGCATTCGGAGTCAACAGTGGTACGGCGttt < 1:1253363/55‑1 (MQ=255) gCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTc < 1:1704000/71‑1 (MQ=255) gatagataACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTaa > 1:2127191/1‑44 (MQ=255) gatagataACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTaa > 1:140605/1‑44 (MQ=255) gataACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAAttt < 1:1524862/60‑1 (MQ=255) aaCCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAt > 1:1038050/1‑71 (MQ=255) cAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTa < 1:2005187/71‑1 (MQ=255) aGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTAt < 1:1666316/71‑1 (MQ=255) gCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATg < 1:334848/71‑1 (MQ=255) gCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCcg > 1:414621/1‑40 (MQ=255) gCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATg < 1:1087255/71‑1 (MQ=255) ttCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGaa < 1:1200654/70‑1 (MQ=255) ttCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAat < 1:2071010/71‑1 (MQ=255) cGGAGTCAACAGTGGTACGGCGTTTAAGTTCTCCGCGGCTc < 1:1176109/41‑1 (MQ=255) gAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATcc > 1:1939880/1‑71 (MQ=255) aaCAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGaa > 1:2022286/1‑70 (MQ=255) aaCAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGaa > 1:1288689/1‑70 (MQ=255) aaCAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGaa > 1:542818/1‑70 (MQ=255) aaCAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGaa > 1:213374/1‑70 (MQ=255) aaCAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg > 1:920696/1‑68 (MQ=255) aaCAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGa > 1:1915679/1‑69 (MQ=255) aaCAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGa > 1:1781616/1‑69 (MQ=255) aCAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACa > 1:2160080/1‑71 (MQ=255) aCAGTGGTAAGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACa > 1:13468/1‑71 (MQ=255) cAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACAt > 1:1690272/1‑71 (MQ=255) aGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACAtt > 1:2184491/1‑71 (MQ=255) gTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCGGAACAtt > 1:2132920/1‑70 (MQ=255) gTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACAtt > 1:1818369/1‑70 (MQ=255) ggTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTTAc > 1:1987292/1‑71 (MQ=255) ggTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTTAc > 1:192268/1‑71 (MQ=255) | TCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTTAC > minE/1151146‑1151278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |