Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 204,556 A→G 100% intergenic (+156/‑28) alaV → / → rrlH tRNA‑Ala/23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE204,5560AG100.0% 148.3 / NA 52intergenic (+156/‑28)alaV/rrlHtRNA‑Ala/23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (23/29);  total (23/29)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGT  >  minE/204495‑204623
                                                             |                                                                   
ttGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:723006/71‑1 (MQ=255)
      cacTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATc                                                      >  1:139222/1‑71 (MQ=255)
            acaatGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCCCAAGaaa                                                          <  1:1382796/61‑1 (MQ=11)
             caatGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGt                                               <  1:91713/71‑1 (MQ=255)
             caatGAAAGGTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGt                                               <  1:82659/71‑1 (MQ=11)
                tgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGaaa                                                          <  1:9204/56‑1 (MQ=255)
                tgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTtgt                                            >  1:446841/2‑71 (MQ=19)
                tgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTtgt                                            >  1:2005859/2‑71 (MQ=19)
                 gAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCggg                                                >  1:1443480/1‑66 (MQ=25)
                 gAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTtgt                                            >  1:1139096/1‑70 (MQ=25)
                  aaaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACa                                                        >  1:445543/1‑57 (MQ=255)
                  aaaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTtgt                                            >  1:400503/1‑69 (MQ=25)
                      ttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGtt                                      <  1:1587779/71‑1 (MQ=21)
                       tgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGtt                                      >  1:110121/1‑70 (MQ=25)
                       tgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGtt                                      >  1:270392/1‑70 (MQ=25)
                             tGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGAc                               <  1:1337376/71‑1 (MQ=21)
                               aGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACt                              >  1:1151043/1‑70 (MQ=25)
                                gTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACt                              >  1:948690/1‑69 (MQ=25)
                                gTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACt                              >  1:277234/1‑69 (MQ=25)
                                 tctctcAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:1722115/38‑1 (MQ=255)
                                 tctctcAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:1216065/38‑1 (MQ=255)
                                 tctctcAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:2057977/38‑1 (MQ=255)
                                 tctctcAAATTTTCGCAACACGATGATGGATCGCAAGAAAc                                                         <  1:1628218/41‑1 (MQ=255)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGaa                                                           <  1:362910/37‑1 (MQ=255)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:415237/36‑1 (MQ=255)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGa                                                            <  1:821566/36‑1 (MQ=255)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGtt                                              <  1:756997/50‑1 (MQ=255)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                         >  1:254933/1‑71 (MQ=21)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                         >  1:851952/1‑71 (MQ=21)
                                   tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                         >  1:436183/1‑71 (MQ=21)
                                    ctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                            <  1:1966953/67‑1 (MQ=25)
                                     tcAAATTTTCGCAACACGATGATTGATCGCAAGaa                                                           <  1:222062/35‑1 (MQ=14)
                                     tcAAATTTTCGCAACACGATGATGGATGGCAAGAAACATCTTCGGGTtg                                             >  1:1287880/1‑49 (MQ=11)
                                     tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTtg                                             >  1:1363722/1‑49 (MQ=255)
                                     tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                         <  1:1426024/69‑1 (MQ=25)
                                     tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                         <  1:1187609/69‑1 (MQ=25)
                                      cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                  <  1:2185200/59‑1 (MQ=255)
                                      cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                  <  1:2028842/59‑1 (MQ=255)
                                      cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                       >  1:958941/1‑70 (MQ=25)
                                      cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                       >  1:99293/1‑70 (MQ=25)
                                        aaTTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac                    <  1:1571887/71‑1 (MQ=21)
                                             tCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                <  1:610284/70‑1 (MQ=25)
                                             tCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                <  1:834742/70‑1 (MQ=25)
                                             tCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                <  1:373976/70‑1 (MQ=25)
                                              cGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg               <  1:555312/70‑1 (MQ=25)
                                              cGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg               <  1:912219/70‑1 (MQ=25)
                                              cGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg               <  1:177265/70‑1 (MQ=25)
                                                  acacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc                          <  1:644763/55‑1 (MQ=255)
                                                  acacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc          >  1:1662207/1‑71 (MQ=21)
                                                     cGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCt        >  1:1102897/1‑70 (MQ=25)
                                                     cGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTg       >  1:874537/1‑71 (MQ=21)
                                                     cGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTg       >  1:877001/1‑71 (MQ=21)
                                                          atggATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGt  <  1:1586844/71‑1 (MQ=21)
                                                             |                                                                   
TTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGT  >  minE/204495‑204623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: