| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 683,918 | Δ1 bp | 100% | coding (555/663 nt) | yccT ← | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 683,918 | 0 | C | . | 100.0% | 54.8 / NA | 13 | coding (555/663 nt) | yccT | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (13/0); total (13/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTGTGAGCACCTGAGACTGCGGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTG > minE/683899‑683970 | cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCt > 1:237768/1‑70 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:139495/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:169181/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:206223/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:243750/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:253189/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:380264/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:482647/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:490399/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:497365/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:531468/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:534241/1‑71 (MQ=255)cTGTGAGCACCTGAGACTG‑GGTGGAATAGCATCAAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTg > 1:543064/1‑71 (MQ=255) | CTGTGAGCACCTGAGACTGCGGTGGAATAGCATCCAGCTCGGAAACACCCGAAAGCAGCGTACTGTCATCTG > minE/683899‑683970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |