| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 584,195 | Δ2 bp | 100% | coding (1699‑1700/1722 nt) | cydC ← | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 584,195 | 0 | T | . | 100.0% | 105.8 / NA | 24 | coding (1700/1722 nt) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (24/0); total (24/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | minE | 584,196 | 0 | A | . | 100.0% | 105.8 / NA | 24 | coding (1699/1722 nt) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (24/0); total (24/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCCT > minE/584135‑584207 || cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGcccc > 1:449167/1‑70 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGcccc > 1:277501/1‑70 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:3251/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:56052/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:517465/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:491557/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:473084/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:467984/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:436653/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:419314/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:400750/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:369699/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:334731/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:126098/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:298701/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:277373/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:26508/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:264381/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:252133/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:22832/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:227053/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:218886/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:184947/1‑71 (MQ=255)cGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGG‑‑ATAACGCCCCt > 1:154643/1‑71 (MQ=255) || CGCAAAACTCCACGCAAGTCGGATCGTTCAATAATAGCTTACAAACCCTGCTTGAACTGGTAATAACGCCCCT > minE/584135‑584207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |