Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2390508	2390659	152	61 [0]	[0] 10	rhtC	threonine efflux system

GACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTT  >  minE/2390437‑2390507                                                                       | gACATACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:385065/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTTAGTAAACCtt  <  1:516112/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:529639/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:394404/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:402061/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:413261/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:4253/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:447175/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:476240/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:489692/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:503456/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:50572/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:51598/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:518563/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:51960/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:371495/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:556118/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:56708/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:568055/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:570222/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:609908/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:611986/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:618303/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:620011/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:6276/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:631900/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:635407/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:638152/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:658036/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:74987/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:241890/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:104325/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:119035/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:119492/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:126697/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:134176/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:138097/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:141178/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:146165/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:160120/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:174952/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:177755/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:187988/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:195331/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:218491/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:100580/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:248386/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:286312/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:286455/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:298212/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:301772/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:313156/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:321059/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:3246/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:332634/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:342149/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:345463/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:347255/71‑1 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:369892/71‑1 (MQ=255)       caaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:241489/65‑1 (MQ=255)             gaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt  <  1:486326/59‑1 (MQ=255)                                                                       | GACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTT  >  minE/2390437‑2390507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑