Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2540358	2540367	10	53 [0]	[0] 52	rfaJ	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase

CGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGAAA  >  minE/2540287‑2540357                                                                       | cGTGGCACTAATGGGCAATTTATCCAACGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:369817/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAATATTCCCCCTGGaaa  <  1:229833/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTTGaaa  <  1:537198/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:556008/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:466626/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:477672/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:487921/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:490822/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:49855/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:508208/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:526345/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:526368/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:533166/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:547838/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:450665/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:583191/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:583606/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:598190/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:617504/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:6218/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:639623/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:653998/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:66300/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:68679/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:78366/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:8700/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:445354/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:110701/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:128643/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:146631/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:153071/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:170602/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:201752/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:232995/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:238791/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:248687/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:287167/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:333727/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:34222/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:384989/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:385989/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:389705/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:405062/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:413458/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:414308/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:421383/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:426228/71‑1 (MQ=255) cGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:108564/71‑1 (MQ=255) cGTGGCACAAATGCGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:597975/71‑1 (MQ=255)  gTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:338392/70‑1 (MQ=255)                   tttATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:592450/53‑1 (MQ=255)                              gTAAAATACTATAAAATAGCTTAAGAAAAATCCCCCTGGaaa  <  1:554471/42‑1 (MQ=255)                                 aaaTACTATAAAATAGCTTTAGAAAATTCCCCCTGGaaa  <  1:405690/39‑1 (MQ=255)                                                                       | CGTGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCCCTGGAAA  >  minE/2540287‑2540357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑