Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540100	540191	92	18 [0]	[2] 5	[rhtA]	[rhtA]

TAAATATGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGT  >  minE/540029‑540099                                                                       | taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:493070/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:90614/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:643756/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:579398/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:576138/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:555392/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:55238/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:503632/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:493422/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:131135/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:460067/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:424619/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:391787/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:256677/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:255685/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:210141/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:158522/71‑1 (MQ=255) taaataTGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGt  <  1:15699/71‑1 (MQ=255)                                                                       | TAAATATGCTTTTGCATAATTCGATATATAAAGACGGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGT  >  minE/540029‑540099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑