Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540262	540574	313	5 [0]	[0] 45	rhtA	threonine and homoserine efflux system

AAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACC  >  minE/540575‑540643 |                                                                     aaaTCGTCATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:1750/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGACCCGCCAGCACAAcc  >  1:271095/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:48283/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:360540/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:363859/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:384051/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:405394/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:417798/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:420628/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:43026/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:462390/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:481002/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:343257/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:509175/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:560779/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:562198/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:572583/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:572634/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:614087/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:80623/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:85754/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:93994/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:235511/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:126558/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:137002/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:152797/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:155050/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:160578/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:164185/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:18929/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:23356/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:115465/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:249423/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:267103/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:267953/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:29087/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:295437/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:324443/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:326824/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:335402/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAcc  >  1:34168/1‑69 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAc   >  1:321342/1‑68 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAc   >  1:604180/1‑68 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAc   >  1:73703/1‑68 (MQ=255) aaaTCGACATGGGAAACGTCTTGCCCCAGCGGTAGAAGGacc                             >  1:63253/1‑40 (MQ=255) |                                                                     AAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACC  >  minE/540575‑540643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑