Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540644	540721	78	41 [0]	[0] 27	rhtA	threonine and homoserine efflux system

CCCAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAAACAA  >  minE/540722‑540792 |                                                                       cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATcccaccca                     >  1:60707/1‑52 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:324797/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:99017/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:657633/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:577258/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:576603/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:562597/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:488688/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:43776/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:433559/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:419681/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:382390/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:358058/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:128361/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:307296/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:29536/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:269934/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:253352/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:235701/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:217437/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:208348/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:18897/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:176020/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaacaa  >  1:167124/1‑71 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaaca   >  1:302052/1‑70 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaaca   >  1:47596/1‑70 (MQ=255) cccAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAaaca   >  1:157231/1‑70 (MQ=255) |                                                                       CCCAGCGGTACTGTCTGAATAGAAAGATAAAAAAGATAATTCATCCCACCCAGCGAAACGCCGTAAAACAA  >  minE/540722‑540792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑