Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	558908	559301	394	28 [1]	[0] 46	cmr	multidrug efflux system protein

CTCCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGA  >  minE/559302‑559369 |                                                                    ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAAcc                                 >  1:146201/1‑37 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAgg                   >  1:20601/1‑51 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACt    >  1:134302/1‑66 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTg   >  1:140942/1‑67 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTg   >  1:521941/1‑67 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:617227/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:512160/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:520761/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:522996/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:559651/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:569659/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:572181/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:578281/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:598926/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:601565/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:606198/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:616864/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:447396/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:629510/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:638911/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:647020/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:649682/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:657782/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:658884/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:94746/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:303026/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:11824/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:131441/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:149782/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:191340/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:223234/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:236994/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:268853/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:273566/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:291434/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:293713/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:490925/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:328884/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:343907/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:353012/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:369023/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:379591/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:425079/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:441960/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:101491/1‑68 (MQ=255) ctcCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGa  >  1:455943/1‑68 (MQ=255) |                                                                    CTCCTTTTTCGGTCTGCAACGAGCCATGCCTGAAACCGCCACGCGTATAGGCGAGAAACTGTCACTGA  >  minE/559302‑559369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑