Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2261071	2261103	33	5 [0]	[0] 56	rpoB	RNA polymerase, beta subunit

CTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGACCC  >  minE/2261104‑2261173 |                                                                      cTTACGAATACGTTTTTTCTCGGTATATGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:399072/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:539390/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:434016/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:4468/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:446893/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:475062/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:47706/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:485913/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:491284/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:493537/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:498785/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:511921/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:526555/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:53367/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:424556/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:570317/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:576093/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:592343/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:601167/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:601948/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:615198/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:646807/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:651890/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:655439/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:657968/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:83932/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:86441/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:94435/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:28483/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:109067/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:1385/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:146688/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:148327/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:15910/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:160268/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:176853/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:206315/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:234996/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:261786/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:269725/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:270995/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:102833/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:285354/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:287654/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:305139/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:311967/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:326026/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:337632/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:355011/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:356264/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:39859/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:40838/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:421674/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:423648/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGACGAccc  <  1:85987/70‑1 (MQ=255) cTTACGAATACGTTTTTTCTAGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGAccc  <  1:421363/70‑1 (MQ=255) |                                                                      CTTACGAATACGTTTTTTCTCGGTATAGGAGTAAACCATAGGGTTCCTCAGCTCGCTGACAAGTCGACCC  >  minE/2261104‑2261173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑