Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 692,900 | T→C | 100% | A144A (GCT→GCC) | hyaD → | protein involved in processing of HyaA and HyaB proteins |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 692,900 | 0 | T | C | 100.0% | 227.0 / NA | 61 | A144A (GCT→GCC) | hyaD | protein involved in processing of HyaA and HyaB proteins |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/61); total (0/61) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AGCAACTGCCCGCTGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCT > minE/692887‑692957 | aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGTGAATTGTGCCGCAACAGGCt < 1:184778/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:55963/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:107436/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:387658/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:405708/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:414013/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:418806/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:455684/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:471779/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:473606/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:502563/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:506439/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:538686/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:541397/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:54397/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:552613/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:375950/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:564892/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:570250/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:582620/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:596459/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:60868/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:62468/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:636700/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:656165/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:75640/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:76899/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:90002/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:94443/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:209105/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:114048/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:126361/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:14047/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:141843/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:15326/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:157878/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:163122/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:165570/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:169838/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:176576/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:183791/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:184118/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:198989/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:201765/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:369602/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:21727/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:227221/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:233622/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:262160/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:316705/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:319584/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:34343/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:345705/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:357164/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:357911/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:36257/71‑1 (MQ=255) aGCAACTGCCCGCCGCGGAACAGGCGGCGCTGGAGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:323077/71‑1 (MQ=255) aGCAACTGCCCACCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:498279/71‑1 (MQ=255) gCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:598056/70‑1 (MQ=255) gCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:399922/70‑1 (MQ=255) gCAACTGCCCGCCGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCt < 1:383359/70‑1 (MQ=255) | AGCAACTGCCCGCTGCGGAACAGGCGGCGCTGGCGCAGCTTGCTGCGTGGGGAATTGTGCCGCAACCGGCT > minE/692887‑692957 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |