Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,536,834 C→T 100% M1I (ATG→ATA) † yfcR ← predicted fimbrial‑like adhesin protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,536,8340CT82.7% 205.2 / 32.7 81M1I (ATG→ATA) †yfcRpredicted fimbrial‑like adhesin protein
Reads supporting (aligned to +/- strand):  ref base C (0/14);  new base T (0/67);  total (0/81)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAG  >  minE/1536773‑1536893
                                                             |                                                           
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:419913/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:509900/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:499614/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:49923/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:489732/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:484285/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:478675/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:464659/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:445612/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:528235/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:419323/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:408762/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:387026/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:385410/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:385087/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:3848/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:377695/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:361496/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:592470/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:94270/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:87942/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:86815/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:79321/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:658898/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:656045/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:626932/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:618952/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:112167/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:584233/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:574706/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:565296/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:560384/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:554366/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:532729/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:529760/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:292906/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:203853/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:353922/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:196157/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:245272/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:172803/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:267573/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:271375/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:271516/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:283418/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:155640/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:283693/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:147948/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:294531/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:138565/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:136649/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:131418/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:329354/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:332001/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:126647/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:340584/71‑1 (MQ=255)
aGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:109614/71‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:211900/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:13715/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:9959/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:311974/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:395558/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:304703/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:259022/70‑1 (MQ=255)
 gACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:464481/70‑1 (MQ=255)
                    ccTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:19741/51‑1 (MQ=255)
                          cccACTACAAACTTTTGACTCATAACTCCCCCCGTTATCAGCCtt                                                    <  1:160742/45‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:473785/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:602012/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:603550/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:2134/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:311113/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:650293/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:560239/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:136381/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:73884/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:542005/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:127662/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:339186/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:366567/71‑1 (MQ=255)
                                                  aCTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag  <  1:34424/71‑1 (MQ=255)
                                                             |                                                           
AGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAG  >  minE/1536773‑1536893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: