| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,698,018 | T→C | 100% | intergenic (+88/‑103) | yfhR → / → csiE | predicted peptidase/stationary phase inducible protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,698,018 | 0 | T | C | 100.0% | 88.5 / NA | 24 | intergenic (+88/‑103) | yfhR/csiE | predicted peptidase/stationary phase inducible protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/0); total (24/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TAAGATGAGAAAAATTCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCTT > minE/1698003‑1698071 | tAAGATGAGAAAAATCCTGTGACGCTTGCCAACAttt > 1:365194/1‑37 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:415077/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:66177/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:614222/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:574673/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:563445/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:558618/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:528561/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:519924/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:496346/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:458901/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:437301/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:436578/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:101460/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:385921/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:366422/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:364977/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:355936/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:330313/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:252836/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:188448/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:146222/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTACCTTCGCCATTTCCtt > 1:127581/1‑69 (MQ=255)tAAGATGAGAAAAATCCTGTGACGCTTGCCAACATTTCAGATGATTAGCATTCCCTTCGCCATTTCCtt > 1:188406/1‑69 (MQ=255) | TAAGATGAGAAAAATTCTGTGACGCTTGCCAACATTTCTGATGATTAGCATTCCCTTCGCCATTTCCTT > minE/1698003‑1698071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |