Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,015,255 | C→A | 100% | A87E (GCG→GAG) | metC → | cystathionine beta‑lyase, PLP‑dependent |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,015,255 | 0 | C | A | 100.0% | 12.9 / NA | 5 | A87E (GCG→GAG) | metC | cystathionine beta‑lyase, PLP‑dependent |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (0/5); total (0/5) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGCGGCAGCGGTTGCTAATTCCATTCTTGCTTT > minE/2015215‑2015285 | cTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGAGGCAGCGGTTGCTAATTCCATTCTTGCttt < 1:125712/71‑1 (MQ=255) cTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGAGGCAGCGGTTGCTAATTCCATTCTTGCttt < 1:144849/71‑1 (MQ=255) cTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGAGGCAGCGGTTGCTAATTCCATTCTTGCttt < 1:223090/71‑1 (MQ=255) cTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGAGGCAGCGGTTGCTAATTCCATTCTTGCttt < 1:69528/71‑1 (MQ=255) cGTGCTATTTCCCTGCGGGGAGGCAGCGGTTGCTAATTCCATTCTTGCttt < 1:543277/51‑1 (MQ=255) | CTGGAAGGTGGCGCAGGCTGCGTGCTATTTCCCTGCGGGGCGGCAGCGGTTGCTAATTCCATTCTTGCTTT > minE/2015215‑2015285 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |