| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 544,385 | G→T | 100% | A96S (GCA→TCA) | mntR → | transcriptional regulator of mntH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 544,385 | 0 | G | T | 100.0% | 113.7 / NA | 33 | A96S (GCA→TCA) | mntR | transcriptional regulator of mntH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (0/33); total (0/33) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
ACGGCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTTGTTGG > minE/544382‑544451 | aCGTCAGAAGGAGAGAAGCTGGCGCAGGACAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:369120/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGACAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:241287/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:571201/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:456967/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:464151/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:474617/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:51549/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:524038/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:549195/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:564580/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:451169/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:571783/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:61184/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:645885/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:654976/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:70265/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:72962/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:98841/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:455443/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:12985/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:447031/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:375717/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:374636/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:339540/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:295031/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:291087/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:26846/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:212670/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:207334/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:189374/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:17903/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:167369/70‑1 (MQ=255)aCGTCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTtgttgg < 1:145543/70‑1 (MQ=255) | ACGGCAGAAGGAGAGAAGCTGGCGCAGGAAAGCCGCGAGCGACATCAGATAGTCGAAAATTTCTTGTTGG > minE/544382‑544451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |