Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	946392	946399	8	2 [0]	[1] 2	ddpA	D‑Ala‑D‑Ala transporter subunit

CGGCAAAATCCGGACTCCAGTTGCCAATCGCAATGTCGTAATCACCTTTACCCACTCTGTCG  >  minE/946330‑946391                                                              | cGGCAAAATCCGGACTCCAGTTGCCAATCGCAATGTCGTAATCACCTTTACCCACTCTGTcg  >  1:100981/1‑62 (MQ=255) cGGCAAAATCCGGACTCCAGTTGCCAATCGCAATGTCGTAATCACCTTTACCCACTCTGTcg  >  1:365983/1‑62 (MQ=255)                                                              | CGGCAAAATCCGGACTCCAGTTGCCAATCGCAATGTCGTAATCACCTTTACCCACTCTGTCG  >  minE/946330‑946391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑