Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	247308	247356	49	3 [0]	[0] 3	phoR	sensory histidine kinase in two‑component regulatory system with PhoB

CCGGAAGGCACGCATATCACCGTACGCTGGCAGCGAGTGCCGCACGGTGCCGAATTTAGCGT  >  minE/247357‑247418 |                                                              ccGGAAGGCACGCATATCACCGTACGCTTGCAGCGAGTGCCGCACGGTGCCGAATTTAGCGt  <  1:61604/62‑1 (MQ=255) ccGGAAGGCACGCATATCACCGTACGCTGGCAGCGAGTGCCGCACGGTGCCGAATTTAGCGt  <  1:202887/62‑1 (MQ=255) ccGGAAGGCACGCATATCACCGTACGCTGGCAGCGAGTGCCGCACGGTGCCGAATTTAGCGt  <  1:536555/62‑1 (MQ=255) |                                                              CCGGAAGGCACGCATATCACCGTACGCTGGCAGCGAGTGCCGCACGGTGCCGAATTTAGCGT  >  minE/247357‑247418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑