Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,858,035 C→A 100% T103T (ACC→ACA amiB → N‑acetylmuramoyl‑l‑alanine amidase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,858,0350CA100.0% 10.6 / NA 5T103T (ACC→ACAamiBN‑acetylmuramoyl‑l‑alanine amidase II
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (0/5);  total (0/5)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTACGGCTGGTGGTCGATCTTACCGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATGG  >  minE/2858012‑2858073
                       |                                      
cTACGGCTGGTGGTCGATCTTACAGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATgg  <  1:411681/62‑1 (MQ=255)
cTACGGCTGGTGGTCGATCTTACAGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATgg  <  1:430701/62‑1 (MQ=255)
cTACGGCTGGTGGTCGATCTTACAGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATgg  <  1:509349/62‑1 (MQ=255)
cTACGGCTGGTGGTCGATCTTACAGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATgg  <  1:556210/62‑1 (MQ=255)
 tACGGCTGGTGGTCGATCTTACAGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATgg  <  1:216120/61‑1 (MQ=255)
                       |                                      
CTACGGCTGGTGGTCGATCTTACCGAAAACGGTAAAACCGAAGCGGTGAAGCGGCAGAATGG  >  minE/2858012‑2858073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: