| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 726,335 | A→G | 100% | D96G (GAC→GGC) | yceD → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 726,335 | 0 | A | G | 100.0% | 38.7 / NA | 12 | D96G (GAC→GGC) | yceD | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/2); total (10/2) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TATTGTTTTAGTCCTGTGCGTTCAGACGAACAGGCTGAAGCACTGCCGGAAGCGTATGAACCGATTGAGGTTAAC > minE/726310‑726384 | tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:135681/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:200510/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:275761/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:37955/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:416553/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:423816/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:60305/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:84465/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:92911/1‑43 (MQ=255)tATTGTTTTAGTCCTGTGCGTTCAGGCGAACAGGCTGAAGCAc > 1:99907/1‑43 (MQ=255) cTGTGCGTTCAGGCGAACAGGCTGAAGCACTGCCGGAAGCGTATGAACCGATTGAGGTTAAc < 1:40972/62‑1 (MQ=255) cTGTGCGTTCAGGCGAACAGGCTGAAGCACTGCCGGAAGCGTATGAACCGATTGAGGTTAAc < 1:84467/62‑1 (MQ=255) | TATTGTTTTAGTCCTGTGCGTTCAGACGAACAGGCTGAAGCACTGCCGGAAGCGTATGAACCGATTGAGGTTAAC > minE/726310‑726384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |