Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2730670	2730706	37	67 [0]	[0] 36	slyX	conserved hypothetical protein

GATGATCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGATT  >  minE/2730599‑2730669                                                                       | gatgatTGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACCTTCAGTTCTTCAATGGTGAtt  <  1:2193942/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCTATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2397427/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2651876/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2869340/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:283842/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:276669/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:274694/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2685557/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2674548/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2652961/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2883985/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2651874/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2567565/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2557011/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2514382/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2456006/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2445398/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:424262/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:965930/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:915023/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:910154/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:853380/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:681839/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:671468/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:669678/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:460952/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2417925/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:385612/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:3236688/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:3162969/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:3120185/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:3105013/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:3100542/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:3075716/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:142251/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1028854/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:10642/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:114650/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1153026/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1166123/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1183114/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1235444/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1255888/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:126664/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:128073/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1339296/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1399759/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1401629/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1404183/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:1013135/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2114907/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2417381/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2391013/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2346162/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2341465/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2324391/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2202086/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2116752/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1634117/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2097535/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:2091068/71‑1 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:2087061/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1939515/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1921242/1‑71 (MQ=255) gatgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  >  1:1773102/1‑71 (MQ=255)  atgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:827469/70‑1 (MQ=255)  atgatCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGAtt  <  1:3202883/70‑1 (MQ=255)                                                                       | GATGATCGCGCAGTTTCGCCATCTCCATTTCATGAGCGGTCACCGTGACGTTCAGTTCTTCAATGGTGATT  >  minE/2730599‑2730669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑