Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1147052	1147058	7	2 [0]	[0] 29	chbR	DNA‑binding transcriptional dual regulator

ACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGG  >  minE/1147059‑1147129 |                                                                       acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTc                    >  1:228675/1‑53 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTGATCACTg   >  1:2735483/1‑70 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:230877/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:816182/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:707159/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:676016/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:501518/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:445051/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:443869/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2968186/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2760334/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2717960/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2644883/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2598424/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2453830/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2397180/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1023014/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2214068/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:2033404/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1919217/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1895704/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1774387/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1752225/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1555233/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1460081/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1264119/1‑71 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTg   >  1:1847961/1‑70 (MQ=255) acaTGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTg   >  1:1382150/1‑70 (MQ=255) acaTGGAAGTTTTTGCCATAAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTgg  >  1:1394912/1‑71 (MQ=255) |                                                                       ACATGGAAGTTTTTGCCATTAAACAACTGCTGTTCTCGGGCAGTGGCAATTTCCGGCGCGTTAATCACTGG  >  minE/1147059‑1147129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑