| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 958,174 | 0 | A | G | 60.6% | 44.6 / 77.9 | 66 | V711A (GTC→GCC) | pqqL | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base A (26/0); new base G (40/0); total (66/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATC > minE/958111‑958229 | gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGa > 1:2038009/1‑64 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACTTTAc > 1:1524557/1‑70 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACAtt > 1:1443605/1‑68 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:2366488/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:2501605/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:2504428/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:2245976/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:3140202/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:1619031/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:2132047/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:1556754/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:1380135/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:344986/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:404621/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:1232618/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:416646/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:509353/1‑71 (MQ=255)gAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc > 1:596668/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:2105656/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:2097328/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:2044376/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:2512489/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:1332860/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:3187791/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:704484/1‑71 (MQ=255) agagTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCATCTGCGACATTACCGACaa > 1:3179248/1‑71 (MQ=255) agagTGTTAGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa > 1:971329/1‑71 (MQ=255) aGTTTGTCTTGTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:525945/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACaaa > 1:1331645/1‑35 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGatat > 1:2893914/1‑43 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGaat > 1:2019286/1‑57 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAAc > 1:580544/1‑60 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTgg > 1:892804/1‑66 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGAt > 1:2829595/1‑70 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1034644/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2024170/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:3244890/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:3245356/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:3271124/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1261898/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1245356/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1215761/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1211726/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1173775/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:697386/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1124614/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:745628/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:747207/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:874188/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1851436/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1974647/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2208805/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1971371/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2362633/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1940591/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2457588/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2477190/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2486619/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:3229179/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1795662/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2700070/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2700790/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2746185/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:2827976/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1752838/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATc > 1:1572825/1‑71 (MQ=255) aGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTCGCGATc > 1:1790573/1‑71 (MQ=255) | GAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGATC > minE/958111‑958229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |