Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,444,8090GA64.3% 40.6 / 40.5 42N109N (AAC→AATilvDdihydroxyacid dehydratase
Reads supporting (aligned to +/- strand):  ref base G (6/9);  new base A (27/0);  total (33/9)
Fisher's exact test for biased strand distribution p-value = 1.12e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CGGGGTGATTTTGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAATA  >  minE/2444755‑2444862
                                                      |                                                     
cGGGGTGATTTTGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGtt                                                     <  1:2936231/57‑1 (MQ=255)
cGGGGTGATTTTGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGtt                                                     <  1:1785447/57‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:1996228/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:2846677/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:2792154/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:2311824/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:2117765/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:210653/71‑1 (MQ=255)
        ttttGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCa                               <  1:193333/71‑1 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAAt   >  1:1616880/1‑70 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAAt   >  1:1400762/1‑70 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAAt   >  1:3053455/1‑70 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAAt   >  1:308530/1‑70 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAAt   >  1:3138021/1‑70 (MQ=255)
                                     gCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGCAATCAGCGATCAGTTCGCGAGATGGCAGTGaa    >  1:2456967/1‑69 (MQ=255)
                                       gtgggCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1399664/4‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGCCCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1598356/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGCCCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:424428/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACTATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:2139801/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGCCCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1243555/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGaa                                  >  1:2429584/1‑37 (MQ=18)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1039183/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:3870/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:767033/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:3136356/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:539084/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:514203/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:32170/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:846367/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:3275414/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:2701768/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:266595/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:2595675/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:2581336/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:2097968/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1520043/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1497295/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1362708/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:135704/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1320142/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1254495/1‑69 (MQ=255)
                                       gTCGGCGCAGTGGGCATTGACCATGTACTCGACCGAATCGGCGATCAGGTCGCGCGAGGGCAGCGAGTa  >  1:1105473/1‑69 (MQ=255)
                                                      |                                                     
CGGGGTGATTTTGTCGCAGTTAGAGATGCAGACCATGGCGTCGGCGCAGTGGGCGTTGACCATATACTCAACGGAATCAGCGATCAGTTCGCGAGATGGCAGTGAATA  >  minE/2444755‑2444862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: