| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 1,511,849 | T→C | W373R (TGG→CGG) | pta → | phosphate acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,511,849 | 0 | T | C | 99.4% | 583.6 / NA | 155 | W373R (TGG→CGG) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (103/51); minor base A (1/0); total (104/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 155 total aligned reads displayed.
TTCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACTGGATCGAATCTCTGACTGCCACTTCTGAGC > minE/1511781‑1511879 | ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTATCTACATCAACGCTGACCgg < 1:2510509/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:327526/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2437234/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2282024/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2723034/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2759134/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2045765/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2900077/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:2982848/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1871479/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1775195/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1617515/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:349483/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:41709/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:564253/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1457359/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:949280/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1074717/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1126198/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:687400/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1126945/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:746479/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:806101/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1162596/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:582921/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg < 1:1237693/71‑1 (MQ=255)ttCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGATGCTAACTACATCAACGCTGACCgg < 1:304235/71‑1 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAGAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:3025534/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCgg > 1:578698/1‑70 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2468833/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:60864/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2446495/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:863324/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:264821/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2718537/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:609954/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:356139/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2854124/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:3139569/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2864674/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2893751/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:855542/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:826812/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2986932/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:3259759/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:3211066/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:3154842/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:825072/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1536678/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1028772/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1163416/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1232589/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1353654/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1378838/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1432903/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1521728/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:168018/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1726837/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1762217/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:1875283/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:197833/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2008799/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2375781/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2271240/1‑71 (MQ=255) tCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGa > 1:2277496/1‑71 (MQ=255) gAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGc < 1:417306/71‑1 (MQ=255) gAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGc < 1:501034/71‑1 (MQ=255) gAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGc < 1:2597435/71‑1 (MQ=255) gAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGc < 1:181520/71‑1 (MQ=255) gagaAAGTTCAGGAATACGTTGCTACCTACATCAACGCTGACCGGATCGAAtctc > 1:1006695/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:2389833/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1057680/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1421305/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:689390/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:2041868/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1494233/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:2496139/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1299710/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:239859/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:40720/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:38191/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:2402741/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:159980/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:909973/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1708761/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1738824/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:939673/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1912802/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtctc > 1:1934906/1‑55 (MQ=255) gagaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAt > 1:775129/1‑52 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAAtct > 1:128880/1‑52 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCagag > 1:1469159/1‑70 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:1321894/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:610774/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:2591993/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:928087/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:2273751/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:943395/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACCGGATCGAATCTCTGACTGCCACTTCTGAgc > 1:2160603/1‑71 (MQ=255) gaAAGTTCAGGAATACGTTGCGAACTACATCAAAGCTGACAGGATCGAATCTCTGa > 1:2649271/1‑56 (MQ=255) | TTCCGGTTGACGATCACGAACGTATCGAGAAAGTTCAGGAATACGTTGCTAACTACATCAACGCTGACTGGATCGAATCTCTGACTGCCACTTCTGAGC > minE/1511781‑1511879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |