Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 363,268 T→C I96M (ATA→ATG fimZ ← predicted DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE363,2680TC98.7% 283.7 / NA 76I96M (ATA→ATGfimZpredicted DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (49/26);  minor base A (1/0);  total (50/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTT  >  minE/363202‑363320
                                                                  |                                                    
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:989243/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:2898991/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:2915911/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:2442406/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:3141647/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:3176801/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:3293575/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:424284/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:1843951/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:582931/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:1149874/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:115172/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:1446582/1‑71 (MQ=255)
cTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGCATCg                                                  >  1:906574/1‑71 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:923343/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:779457/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:1605138/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:1639565/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:2984913/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:915694/71‑1 (MQ=255)
                                   aTTTACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:1434625/71‑1 (MQ=255)
                                    tttACTGACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat               <  1:2572364/70‑1 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCa                               >  1:2988941/1‑48 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTc                            >  1:1491081/1‑51 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGAtt                       >  1:2429349/1‑56 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:3067749/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:317953/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:3054849/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1145153/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:3068515/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:3112609/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:3143587/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:385429/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:486101/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:56955/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:868284/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:699200/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:729436/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:789519/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1552134/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1797303/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1852866/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1882219/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1695273/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1642694/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2066775/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1550859/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2221176/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2408929/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1352482/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1273937/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:1161172/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2820325/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2615540/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2671050/1‑70 (MQ=255)
                                          gACAAAACCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTCATTTAGATGATAAAAAt         >  1:2939994/1‑70 (MQ=255)
                                          gACAAAACCGTTAGAACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2172319/1‑70 (MQ=255)
                                          gACAAAACAGTTAGCACCAGCTTGAATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt         >  1:2099192/1‑70 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:996810/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:1619904/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:702809/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:1024064/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:1793685/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2006702/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:3288953/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:3286119/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:3127115/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2211532/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:3096053/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:24143/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2531837/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2586505/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2957660/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:2953559/71‑1 (MQ=255)
                                                aCCGTTAGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTACGATGATAAAAATAACACtt  <  1:2210772/71‑1 (MQ=255)
                                                      aGCACCAGCTTGCATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACtt  <  1:1475653/65‑1 (MQ=255)
                                                                  |                                                    
CTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTT  >  minE/363202‑363320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: