Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,427,776 | 1 | . | G | 33.3% | 2.8 / 10.1 | 9 | coding (705/1131 nt) | rffE | UDP‑N‑acetyl glucosamine‑2‑epimerase |
Reads supporting (aligned to +/- strand): ref base . (4/2); new base G (0/3); total (4/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GGTTCTCTGACGTTCGGGTTGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTCTGCCAGCGCGTGGCAGATTTCTTCAAAGCCA > minE/2427720‑2427821 | ggTTCTCTGACGTTCGGGTTGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTc > 1:234266/1‑71 (MQ=255) ggTTCTCTGACGTTCGGGTTGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTc > 1:255041/1‑71 (MQ=255) ggTTCTCTGACGTTCGGGTTGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTc > 1:69168/1‑71 (MQ=255) ttGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTCTGCCAGCGCGTGGCAGAt < 1:232411/71‑1 (MQ=255) ttGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTCTGCCAGCGCGTGGCAGAt < 1:235400/71‑1 (MQ=255) cACCGGATAGACAATCTGGATGTCCTGGTGCGTGGTGGTGGCGATGTCTGCCAGCGCGTGGCAGATttc < 1:122890/69‑1 (MQ=255) cACCGGATAGACAATCTGGATGTCCTGGTGCGTGGTGGTGGCGATGTCTGCCAGCGCGTGGCAGATttc < 1:243196/69‑1 (MQ=255) aCCGGATAGACAATCTGGATGTCCTGGTGCGTGGTGGTGGCGATGTCTGCCAGCGCGTGGCAGATttc < 1:126898/68‑1 (MQ=255) gTGC‑‑‑GTGGTGGCGATGTCTGCCAGCGCGTGGCAGATTTCTTCAAAGCCa > 1:158997/1‑49 (MQ=255) | GGTTCTCTGACGTTCGGGTTGAGATGCACCGGATAGACAATCTGGATGTCCTGGTGC‑‑‑GTGGTGGCGATGTCTGCCAGCGCGTGGCAGATTTCTTCAAAGCCA > minE/2427720‑2427821 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |