| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 954040 = | 122 (1.440) | 6 (0.080) | 6/112 | 5.0 | 4.9% | intergenic (‑114/+17) | yddW/gadC | predicted liprotein/predicted glutamate:gamma‑aminobutyric acid antiporter |
| ? | minE | 954060 = | 127 (1.690) | coding (1533/1536 nt) | gadC | predicted glutamate:gamma‑aminobutyric acid antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/954116‑954040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggttaGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT > minE/954060‑954128 TTCCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAA > 1:2680098/1‑71 CCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAAT < 1:2356706/70‑1 CCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAAT < 1:3372997/70‑1 CCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAA < 1:1210714/69‑1 CTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGG > 1:3419756/1‑71 CTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGG > 1:3222244/1‑71 TGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGT > 1:3981932/1‑71 CACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAGCACTAACCATGTCTGAATGGTTA > 1:3037848/1‑71 CACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGTTA < 1:3282404/71‑1 CCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAA > 1:2989872/1‑63 TGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGTT < 1:3392649/62‑1 ACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAAT < 1:2039529/55‑1 CACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATG > 1:2592740/1‑51 CACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATG > 1:2890326/1‑51 CACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAAT > 1:3075356/1‑50 ACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGG > 1:3069375/1‑51 CCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATG > 1:1476497/1‑49 ATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGTTA < 1:3410138/44‑1 GAAACACTAACCATGTCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCAC < 1:1436382/71‑1 ACTAACCATGTCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGG > 1:2322182/1‑70 TAACCATGTCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGC > 1:54439/1‑62 AACCATGTCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTG > 1:2661588/1‑70 CATGTCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAG > 1:1508333/1‑70 TCTGAATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAG < 1:778965/70‑1 ATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGA > 1:242151/1‑71 ATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGG > 1:1501667/1‑55 TGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTtc < 1:1189639/58‑3 GGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACC > 1:403272/1‑71 GGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGC > 1:674004/1‑47 GGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTG > 1:2669093/1‑46 TTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTT < 1:3091843/71‑1 TTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTT < 1:753169/71‑1 TTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTT < 1:3885998/71‑1 TTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAA < 1:887060/63‑1 TTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAA < 1:1606749/63‑1 TAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAAAGTGCACGCGGGTGCAGGAAGAAGTGACCTTT > 1:1506803/1‑71 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGGAGGAAGAAGTGACCTTT < 1:2909109/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT < 1:3975612/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT < 1:2572958/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT < 1:601672/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT < 1:2004592/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT < 1:1621268/70‑1 AGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGT > 1:2508351/1‑41 TTCCTGCACCCGCGTGCACGTTCACCACACTATATTGTGATGAATGACAAGAAACACTAACCATGTCTGAATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/954116‑954040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggttaGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTT > minE/954060‑954128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |