| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1047209 = | 107 (1.260) | 9 (0.120) | 5/114 | 5.5 | 7.8% | coding (85/1110 nt) | ydhH | conserved hypothetical protein |
| ? | minE | 1047246 = | 116 (1.510) | coding (48/1110 nt) | ydhH | conserved hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCCGCTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1047284‑1047209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATCTG > minE/1047246‑1047314 GGCCGCTTTATTGGCGTTATGTCAGGCGCCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGA < 1:2107687/71‑1GGCCGCTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGA < 1:2925062/71‑1 CGCTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGA < 1:2171006/68‑1 CTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAACACC > 1:2454317/1‑71 CTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAACACC > 1:315336/1‑71 TTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAA < 1:2991473/66‑1 GCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAACACC > 1:755169/1‑51 GGTGTTGATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAG > 1:4000575/1‑71 TTGATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGC < 1:3031790/47‑1 TTGATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGC < 1:25659/47‑1 GATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCC > 1:2508340/1‑71 GATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCTGACAT < 1:266568/52‑1 GATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCTGACAT < 1:2281178/52‑1 GATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCT > 1:3906913/1‑47 GATGTTGTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCT > 1:3987459/1‑47 GTGTTGGCGACAATTGATGAACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTT > 1:729483/1‑70 AACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAA < 1:544833/71‑1 AACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTT < 1:3234377/66‑1 AACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCA > 1:3644428/1‑60 ACACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTT < 1:3385457/65‑1 CACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATC < 1:2128291/71‑1 CACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATC > 1:518365/1‑71 ACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATCT > 1:3747651/1‑71 ACCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATCT > 1:970908/1‑71 CCATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATCTG < 1:3268736/71‑1 GGCCGCTTTATTGGCGTTATGTCAGGCACCAGCCTTGATGGTGTTGATGTTGTGTTGGCGACAATTGATGAACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1047284‑1047209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaccATCAAGGCTGGTGCCTGACATAACGCCAATAAAGCGGCCCGATTTCATAGTTCATCCTTTTTCAATCTG > minE/1047246‑1047314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |