Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | minE | 972,207 | (A)6→5 | coding (1014/1029 nt) | lsrC → | AI2 transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 972,202 | 0 | A | . | 100.0% | 41.7 / NA | 10 | coding (1009/1029 nt) | lsrC | AI2 transporter |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (10/0); total (10/0) |
TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230 | tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1149583/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1158407/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1559878/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:175886/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:263480/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:341749/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:696620/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:811676/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:916755/1‑37 (MQ=255) tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAt > 1:719797/1‑36 (MQ=255) | TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |