| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 972,207 | (A)6→5 | coding (1014/1029 nt) | lsrC → | AI2 transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 972,202 | 0 | A | . | 100.0% | 41.7 / NA | 10 | coding (1009/1029 nt) | lsrC | AI2 transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (10/0); total (10/0) | |||||||||||
TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230 | tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1149583/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1158407/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1559878/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:175886/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:263480/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:341749/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:696620/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:811676/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:916755/1‑37 (MQ=255)tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAt > 1:719797/1‑36 (MQ=255) | TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |