Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | minE | 802,452 | +T | coding (601/1071 nt) | dhaK ← | dihydroxyacetone kinase, N‑terminal domain |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 802,449 | 1 | . | T | 96.7% | 220.0 / 0.7 | 61 | coding (604/1071 nt) | dhaK | dihydroxyacetone kinase, N‑terminal domain |
Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (59/0); total (61/0) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
AATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGG‑T‑TTGCCCGCGGCAGGAA > minE/802402‑802466 | aaTGCCGACGCCAAACTCCATCTCATTATCCGCCATGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:902515/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCggaaggaa > 1:700260/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:6152/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:220249/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1000382/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:291459/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:334642/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:354514/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:378350/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:461311/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:474994/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:503564/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:539767/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:562469/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:593472/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:603812/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:606889/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:26164/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:641225/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:656285/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:670094/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:671851/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:694746/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:796438/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:81139/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:817389/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:88186/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:922871/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:940471/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:979046/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1549302/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1007481/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1010520/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1021524/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1026811/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1057571/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1067664/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1096177/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1148061/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:115263/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1153364/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1157701/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1168104/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1216758/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1224794/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1236886/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1291829/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1297200/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:130246/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1343707/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1356124/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1392780/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1428251/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1477536/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1537159/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1539884/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:1546433/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGaa > 1:156985/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGGTT‑TTGCCCGCGGCAGGa > 1:608164/1‑65 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGG‑t > 1:476266/1‑49 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGG‑TGTTGCCCGCGGCAGGaa > 1:1431519/1‑66 (MQ=255) aaTGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGG‑TCTTGCCCGCGGCAGGaa > 1:430652/1‑66 (MQ=255) | AATGCCGACGCCAAACTCCATCTCATTATCCGCCAGGGTAAAAGAAGG‑T‑TTGCCCGCGGCAGGAA > minE/802402‑802466 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |