| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 1,769,616 | (T)7→8 | intergenic (+47/‑224) | yfiO → / → yfiA | predicted lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,769,609 | 1 | . | T | 83.0% | 242.1 / 63.8 | 106 | intergenic (+40/‑231) | yfiO/yfiA | predicted lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| Reads supporting (aligned to +/- strand): ref base . (18/0); new base T (88/0); total (106/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-06 | |||||||||||
Only 100 of 117 total aligned reads displayed.
CAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑T‑T‑TTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAATAT > minE/1769570‑1769671 | cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCg > 1:1144941/1‑40 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCg > 1:385670/1‑40 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTTTTCTGTc > 1:786780/1‑56 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTGTGTCAGtt > 1:224303/1‑60 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTGTGTCAGTtgt > 1:1184331/1‑62 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCt > 1:990332/1‑53 (MQ=39)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCt > 1:90477/1‑53 (MQ=39)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTg > 1:310236/1‑54 (MQ=39)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTg > 1:528186/1‑54 (MQ=39)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTc > 1:1481717/1‑56 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTc > 1:1455053/1‑56 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTc > 1:672475/1‑56 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCa > 1:1076029/1‑57 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGtt > 1:1476241/1‑60 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGt > 1:1479739/1‑59 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGt > 1:1280996/1‑59 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTtgt > 1:1335397/1‑62 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTtg > 1:442307/1‑61 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTtg > 1:467610/1‑61 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGaa > 1:497294/1‑65 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGaa > 1:599071/1‑65 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGaa > 1:686057/1‑65 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGaa > 1:954006/1‑65 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGa > 1:1554069/1‑64 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAAc > 1:1464488/1‑67 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAAc > 1:914398/1‑67 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACt > 1:1280420/1‑68 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACt > 1:1160370/1‑68 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACt > 1:316762/1‑68 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACt > 1:555211/1‑68 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:28954/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:262053/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:68394/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:334233/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:346788/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:24545/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:905544/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:90482/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:455734/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:900659/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:487606/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:841433/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:498132/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:835224/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:820853/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:518391/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:804962/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:773914/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:594386/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1044860/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:635750/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:647101/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1427837/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1144939/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1192018/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1194478/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1202483/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:114067/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1213885/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1139859/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1282285/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1115462/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1291846/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1300634/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1093206/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1422244/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1457789/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:148842/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1508431/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:235453/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:224684/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1548747/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1543844/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1539985/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1020155/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:15256/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1504327/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTATGTCAGTTGTGa > 1:1227502/1‑64 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTT‑T‑TTTTTATTATGTCAGTTGTGAAACTg > 1:1257261/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑t‑t‑tttttttt > 1:1529702/1‑50 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑t‑t‑tttttta > 1:163960/1‑47 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑t‑t‑ttttt > 1:583229/1‑47 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑t‑g‑tttttt > 1:964455/1‑47 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTAttat > 1:178836/1‑51 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTAt > 1:1365051/1‑50 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTAt > 1:382744/1‑50 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTAt > 1:321175/1‑50 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTAt > 1:30587/1‑50 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGtg > 1:1127558/1‑55 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACt > 1:1338375/1‑68 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:232420/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:792151/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:772865/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:767526/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:675243/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:1531487/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑TGT‑TTTTTATTCTGTCAGTTGTGAAACTg > 1:414858/1‑69 (MQ=255)cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑T‑TGTTTTTATTCTGTCAGTTGTGTAACt > 1:928988/1‑68 (MQ=255) gAGCTGCCG‑T‑T‑TTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAatat > 1:1337324/1‑71 (MQ=255) gAGCTGCCG‑T‑T‑TTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAata > 1:1103579/1‑70 (MQ=255) | CAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCG‑T‑T‑TTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAATAT > minE/1769570‑1769671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |