Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 1,769,616 (T)7→8 intergenic (+47/‑224) yfiO → / → yfiA predicted lipoprotein/cold shock protein associated with 30S ribosomal subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,769,6091.T83.0% 242.1 / 63.8 106intergenic (+40/‑231)yfiO/yfiApredicted lipoprotein/cold shock protein associated with 30S ribosomal subunit
Reads supporting (aligned to +/- strand):  ref base . (18/0);  new base T (88/0);  total (106/0)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-06

Only 100 of 117 total aligned reads displayed.

CAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAATAT  >  minE/1769570‑1769671
                                        |                                                                
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCg                                                                   >  1:1144941/1‑40 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCg                                                                   >  1:385670/1‑40 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTTTTCTGTc                                                 >  1:786780/1‑56 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTGTGTCAGtt                                             >  1:224303/1‑60 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTGTGTCAGTtgt                                           >  1:1184331/1‑62 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCt                                                    >  1:990332/1‑53 (MQ=39)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCt                                                    >  1:90477/1‑53 (MQ=39)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTg                                                   >  1:310236/1‑54 (MQ=39)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTg                                                   >  1:528186/1‑54 (MQ=39)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTc                                                 >  1:1481717/1‑56 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTc                                                 >  1:1455053/1‑56 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTc                                                 >  1:672475/1‑56 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCa                                                >  1:1076029/1‑57 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGtt                                             >  1:1476241/1‑60 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGt                                              >  1:1479739/1‑59 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGt                                              >  1:1280996/1‑59 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTtgt                                           >  1:1335397/1‑62 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTtg                                            >  1:442307/1‑61 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTtg                                            >  1:467610/1‑61 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGaa                                        >  1:497294/1‑65 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGaa                                        >  1:599071/1‑65 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGaa                                        >  1:686057/1‑65 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGaa                                        >  1:954006/1‑65 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGa                                         >  1:1554069/1‑64 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAAc                                      >  1:1464488/1‑67 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAAc                                      >  1:914398/1‑67 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACt                                     >  1:1280420/1‑68 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACt                                     >  1:1160370/1‑68 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACt                                     >  1:316762/1‑68 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACt                                     >  1:555211/1‑68 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:28954/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:262053/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:68394/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:334233/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:346788/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:24545/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:905544/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:90482/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:455734/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:900659/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:487606/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:841433/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:498132/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:835224/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:820853/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:518391/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:804962/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:773914/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:594386/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1044860/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:635750/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:647101/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1427837/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1144939/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1192018/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1194478/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1202483/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:114067/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1213885/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1139859/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1282285/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1115462/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1291846/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1300634/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1093206/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1422244/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1457789/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:148842/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1508431/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:235453/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:224684/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1548747/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1543844/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1539985/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1020155/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:15256/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1504327/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTATGTCAGTTGTGa                                         >  1:1227502/1‑64 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTTATTATGTCAGTTGTGAAACTg                                    >  1:1257261/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGtttttttttt                                                      >  1:1529702/1‑50 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGtttttttta                                                       >  1:163960/1‑47 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGttttttt                                                         >  1:583229/1‑47 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGtgtttttt                                                        >  1:964455/1‑47 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTAttat                                                    >  1:178836/1‑51 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTAt                                                       >  1:1365051/1‑50 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTAt                                                       >  1:382744/1‑50 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTAt                                                       >  1:321175/1‑50 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTAt                                                       >  1:30587/1‑50 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGtg                                                 >  1:1127558/1‑55 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACt                                     >  1:1338375/1‑68 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:232420/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:792151/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:772865/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:767526/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:675243/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:1531487/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTGTTTTTTATTCTGTCAGTTGTGAAACTg                                    >  1:414858/1‑69 (MQ=255)
cAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTGTTTTTATTCTGTCAGTTGTGTAACt                                     >  1:928988/1‑68 (MQ=255)
                               gAGCTGCCGTTTTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAatat  >  1:1337324/1‑71 (MQ=255)
                               gAGCTGCCGTTTTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAata   >  1:1103579/1‑70 (MQ=255)
                                        |                                                                
CAGAAACCTGAAACACAAAACGGCAGCCCTTGAGCTGCCGTTTTTTTATTCTGTCAGTTGTGAAACTGAAGCGATTTAGTCGCTATCGATCTCATCAAATAT  >  minE/1769570‑1769671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: