Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	48716	49125	410	19 [0]	[0] 98	[apaH]–[apaG]	[apaH],[apaG]

TTGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGC  >  minE/48662‑48715                                                      | ttGCGGCTGATCCCGGCAAATTCCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1249913/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:993927/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1097766/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:813856/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:764354/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:758611/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:643012/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:472225/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:375230/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:328498/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:31931/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:255710/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:20460/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1556093/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1498381/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1479600/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:144787/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGc  <  1:1431372/54‑1 (MQ=255) ttGCGGCTGATCCCGGCAAATACCGCAAGCAGATGCAGATCGTGATTGCCCAGc  <  1:823145/54‑1 (MQ=255)                                                      | TTGCGGCTGATCCCGGCAAATACCGCCAGCAGATGCAGATCGTGATTGCCCAGC  >  minE/48662‑48715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑