Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	57711	57926	216	58 [0]	[0] 34	rluA	pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)

ACAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGG  >  minE/57641‑57710                                                                      | aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:543789/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1039048/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:220757/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:22405/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:269602/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:33197/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:413221/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:420649/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:421918/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:448330/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:450870/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:471845/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:486139/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:527777/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:160993/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:54960/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:551197/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:553/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:553830/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:597001/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:676269/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:704966/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:834360/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:867057/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:963098/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:970090/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:97326/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:983002/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1363200/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1132082/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1081384/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1149526/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:11567/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1156723/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1200070/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1221682/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1238906/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1536844/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:126658/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1323829/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1371567/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1394742/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:106210/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1423326/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1424010/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1447736/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1453480/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1463953/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1508403/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1527637/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1039548/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACAAGACCTTCTGCgggg  <  1:1247687/70‑1 (MQ=255) aCAGACTTTCTGTTTCGGGAGGTTTGGCCAGTCGCAAATCAGCGGCATATCCACCAGACCTTCTGCgggg  <  1:760934/70‑1 (MQ=255)  cAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1536357/69‑1 (MQ=255)  cAGACTTTCTGTCTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgtgg  <  1:1419289/69‑1 (MQ=255)                      gTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1041867/49‑1 (MQ=255)                       tttGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:1054396/48‑1 (MQ=255)                          ggCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCgggg  <  1:901992/45‑1 (MQ=255)                                                                      | ACAGACTTTCTGTTTCGGGCGGTTTGGCCAGTCGCAAATCAGCGGCAGATCCACCAGACCTTCTGCGGGG  >  minE/57641‑57710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑