Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2137668	2137674	7	59 [0]	[0] 38	truB	tRNA pseudouridine synthase

GGCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGA  >  minE/2137598‑2137667                                                                      | ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCATCAGa  >  1:96518/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:298983/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:2429/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:310349/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:324200/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:348001/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:358836/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:383669/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:385876/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:390764/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:417563/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:422004/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:423538/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:435935/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:46828/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:471349/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:480093/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:481631/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:64712/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:710669/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:716776/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:725079/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:777740/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:818659/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:825365/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:894753/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:931093/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:940487/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:962536/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1219238/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1035820/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1046121/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1051171/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:105139/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1052852/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1063167/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1076999/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1080999/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:112214/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1140950/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1174546/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1187947/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1216062/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1008988/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1231730/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1245179/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1253974/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1271506/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1315643/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1327933/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1329922/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1431078/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1435596/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1441148/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1459227/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1518313/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1552395/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:1554172/1‑70 (MQ=255) ggCATCAGAAGTATCGGTACGCTGTCCAAGACCCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGa  >  1:86068/1‑70 (MQ=255)                                                                      | GGCATCAGAAGTATCGGTACGCTGTCCAAGACGCGCAATGACCCGATAGCGTTTGTCGGAGTCCAGCAGA  >  minE/2137598‑2137667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑