Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	247317	247637	321	66 [0]	[0] 37	phoR	sensory histidine kinase in two‑component regulatory system with PhoB

AAAAAACAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAG  >  minE/247246‑247316                                                                       | aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGTTCAGCTACGCAg  <  1:776288/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:507516/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:280160/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:28582/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:293570/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1020362/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:358635/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:360027/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:387461/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:406871/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:453099/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:455270/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:473045/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:48547/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:490478/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:498079/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:357675/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:508433/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:569946/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:585605/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:609523/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:695473/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:704199/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:775591/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:778709/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:844048/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:893681/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:909278/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:971849/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1371095/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1030540/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1035770/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1093722/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1118924/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:112312/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1258632/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1264150/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1308033/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:131995/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1349959/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1362318/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:273240/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1397856/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1463991/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:262479/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1511728/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:247597/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1526848/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:239939/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1555341/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:237774/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1556834/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1483900/71‑1 (MQ=255) aaaaaaCAGACATTTACCTTTGAGATAGAGAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:914173/71‑1 (MQ=255)  aaaaaCATACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1133157/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:711686/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:817916/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:808463/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:177189/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1147651/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1228788/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:385057/70‑1 (MQ=255)  aaaaaCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:1419730/70‑1 (MQ=255)      aCAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:444257/66‑1 (MQ=255)                                  ggCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:401401/38‑1 (MQ=255)                                    ccTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAg  <  1:44475/36‑1 (MQ=255)                                                                       | AAAAAACAGACATTTACCTTTGAGATAGATAACGGCCTCAAGGTGTCTGGCAACGAAGATCAGCTACGCAG  >  minE/247246‑247316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑