Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1785080	1785431	352	169 [1]	[0] 59	recN	recombination and repair protein

AGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGA  >  minE/1785432‑1785493 |                                                              aGCCCTGAGGCATTTCCACAGTATTACCAGTCGCTACTGgaagaa                   >  1:86939/1‑45 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGATGAACAGCAGCAACTGGACGa  >  1:989958/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAAc                  >  1:995906/1‑46 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACg   >  1:1042708/1‑61 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACg   >  1:669967/1‑61 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACg   >  1:768344/1‑61 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACg   >  1:869646/1‑61 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:504296/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:567227/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:534716/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:519328/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:51788/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:374289/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:482458/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:410042/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:407817/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:380469/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:356965/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:618872/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:628380/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:687611/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:86740/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:889013/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:929513/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:954630/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:962675/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:971274/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:982821/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:996987/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1468598/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1012980/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1105623/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1143872/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1159556/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1171251/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1236791/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1250124/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1337309/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1348803/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1351750/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1353120/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1360589/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:141088/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1007642/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1489688/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1500202/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1502554/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1547510/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1548734/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:1557218/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:182218/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:182243/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:190210/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:261922/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:282627/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:283392/1‑62 (MQ=255) aGCCCTGAGGCATTGCCACAGTATTACAAGTCGCTACTGGAAGAACAGCAGCAACTGGACg   >  1:617428/1‑61 (MQ=255) aGCCCTGAGGCATAGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGa  >  1:502245/1‑62 (MQ=255) aGCCCTCAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCaa          >  1:13297/1‑54 (MQ=255) |                                                              AGCCCTGAGGCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGA  >  minE/1785432‑1785493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑