Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2344154	2344174	21	72 [0]	[0] 56	glnG	fused DNA‑binding response regulator in two‑component regulatory system with GlnL, nitrogen regulator I (NRI)

CACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAT  >  minE/2344175‑2344222 |                                                cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGtt            >  1:1253499/1‑38 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCTGTGAGGAt  >  1:808726/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:739318/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:383764/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:395313/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:418522/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:447336/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:474019/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:47883/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:526022/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:535561/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:547381/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:552055/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:58140/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:586619/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:666317/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:691294/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:360702/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:745373/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:757304/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:765211/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:767958/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:826795/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:832713/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:835571/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:872433/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:878444/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:899714/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:928499/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1431002/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1033174/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:108987/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1093445/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1099063/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1103121/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1162363/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1167549/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1175818/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1191116/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:130207/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1401579/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1407368/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:142169/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1031117/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1456434/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1465386/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1500716/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:1521563/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:200502/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:245658/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:262719/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:281849/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:295282/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:301052/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:348037/1‑48 (MQ=255) cACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAt  >  1:360436/1‑48 (MQ=255) |                                                CACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCCGTGAGGAT  >  minE/2344175‑2344222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑