Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2662100	2662559	460	46 [0]	[0] 92	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

GCGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGA  >  minE/2662560‑2662630 |                                                                       gcGTAGAGCTCTTCGAATTCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1078033/71‑1 (MQ=255) gcGTAGACCTCTTCGATATCCCACGGGTAATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:630684/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTTTGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1094255/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:537542/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:64370/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:640064/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:630095/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:616802/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:613093/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:603412/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:594782/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:592046/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:587500/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:578020/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:558150/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:660613/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:506557/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:50163/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:495431/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:49002/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:48432/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:484270/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:480783/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:438314/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:433386/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:873079/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:988880/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:986476/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:9845/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:980621/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:976240/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:959626/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:951620/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:947227/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:925126/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:877326/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:659232/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:868767/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:839753/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:808597/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:807037/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:801714/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:793450/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:736432/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:720359/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:719003/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:393539/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1229140/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1441157/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1430377/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1416218/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1396435/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1394656/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:137886/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:134344/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1335641/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1299778/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1278511/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1229437/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1459826/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1227455/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1226414/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1218962/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1194670/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1191020/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1172052/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1171951/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1159864/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1072092/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:10364/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:239567/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1018774/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:352108/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:33926/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:337811/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:305023/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:303444/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:299891/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:295635/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:289119/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:279451/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:412897/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:235853/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:235341/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:216798/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:176557/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:157808/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1560386/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1534362/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1525016/71‑1 (MQ=255) gcGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:147782/71‑1 (MQ=255) gcGTAGACCTCATCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGa  <  1:1468912/71‑1 (MQ=255) |                                                                       GCGTAGACCTCTTCGAAATCCCACGGGTTATGCAGTTCAATCTCAACGCTCACCACTTCTGTTTCTGGCGA  >  minE/2662560‑2662630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑