| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 1,677,674 | T→A | intergenic (‑124/+25) | ndk ← / ← pbpC | multifunctional nucleoside diphosphate kinase, apyrimidinic endonuclease, and 3'‑phosphodiesterase/fused transglycosylase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,677,674 | 0 | T | A | 100.0% | 373.4 / NA | 99 | intergenic (‑124/+25) | ndk/pbpC | multifunctional nucleoside diphosphate kinase, apyrimidinic endonuclease, and 3'‑phosphodiesterase/fused transglycosylase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (0/99); total (0/99) | |||||||||||
TGAAGGTAACATTTTTTTAAAATAAAATGAGTTTTAGCAACAATCAGGGACAAAACAGACTAT > minE/1677640‑1677702 | tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:539003/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:677639/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:657168/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:652104/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:645125/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:63230/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:624695/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:602122/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:583024/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:581841/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:565828/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:564887/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:541093/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:682176/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:525408/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:477850/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:476955/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:457789/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:452985/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:403721/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:385679/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:369940/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:345623/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:341795/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:331690/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:826534/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:941641/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:916652/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:894657/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:884998/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:874059/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:868080/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:863777/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:858198/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:844259/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:836579/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:836147/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:329998/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:825275/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:816156/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:805138/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:798030/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:795391/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:791541/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:790311/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:77013/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:74976/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:7205/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:71272/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1239181/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1023470/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1341859/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1334703/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1334099/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1334082/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1309509/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:127890/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1271964/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1270525/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1265694/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:125857/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1349305/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1218299/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1201717/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:118373/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1173909/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:117016/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1161421/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1130084/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1119921/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1117300/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1049272/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1037569/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1528788/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:324784/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:323359/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:321174/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:294599/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:290226/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:270190/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:238860/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:229239/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:190830/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1547855/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1545034/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1359965/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1527409/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1525987/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1499588/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:149909/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1484537/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1472823/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1470256/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1449553/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1412207/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1400235/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:1393694/63‑1 (MQ=255)tgaAGGTAACATTTTTTTAAAATAAACCCAGTTCAAGCAACAATCAGGGACAAAATAGACTAt < 1:1122304/63‑1 (MQ=255)tgaAGGTAACAATTTTTTAAAATAAACCCAGTTTAAGCAACAATCAGGGACAAAATAGACTAt < 1:744458/63‑1 (MQ=255) | TGAAGGTAACATTTTTTTAAAATAAAATGAGTTTTAGCAACAATCAGGGACAAAACAGACTAT > minE/1677640‑1677702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |